Giotto Suite

An open-source and technology-agnostic spatial multi-omics analysis platform

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Giotto Suite is a collection of open source software tools, including data structures and methods, for the comprehensive analysis and visualization of spatial multi-omics data at multiple scales and resolutions. It extends and improves our previous R package Giotto. The underlying framework of Giotto Suite is generalizable to virtually all current and emerging spatial technologies which may differ in resolution (e.g. subcellular, single cell, or multiple cells), spatial dimension (i.e. 2D vs. 3D), molecular modality (e.g. protein, RNA, DNA, …), and throughput (i.e. number of cells and analytes). Giotto Suite is designed to ensure spatial analysis solutions remain compatible with current and future spatial -omics technologies and platforms. It will also aid in the further integration of spatial -omics with external analysis pipelines and tools.

Workflow

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Data Structure

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Analysis

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More technical information can be found in the getting started section.

References

Cite Giotto

Citing Giotto

License

Full License

https://img.shields.io/github/license/RubD/Giotto

Community

Code of Conduct

Authors and Developers

Ruben Dries

Author, Maintainer

Jiaji George Chen

Author

Natalie Del Rossi

Author

Emma Kelley

Author

Junxiang Xu

Author

Guo-Cheng Yuan

Author

Joselyn Chávez

Author

Adriana Sistig

Author

Matthew O’Brien

Author

Edward C. Ruiz

Author