crossSectionGenePlot#

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Last Updated: Mar 11, 2023

Description#

Visualize cells and gene expression in a virtual cross section according to spatial coordinates

Usage#

crossSectionGenePlot(
  gobject = NULL,
  spat_loc_name = "raw",
  crossSection_obj = NULL,
  name = NULL,
  spatial_network_name = "Delaunay_network",
  default_save_name = "crossSectionGenePlot",
  ...
)

Arguments#

`gobject`	giotto object
`spat_loc_name`	name of spatial locations
`crossSection_obj`	crossSection object
`name`	name of virtual cross section to use
`spatial_network_name`	name of spatial network to use
`default_save_name`	default save name for saving, don’t change, change save_name in save_param
`...`	parameters for spatGenePlot2D

Details#

Description of parameters.

Value#

ggplot

See Also#

spatGenePlot3D and spatGenePlot2D