crossSectionGenePlot#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/cross_section.R#L579

Description#

Visualize cells and gene expression in a virtual cross section according to spatial coordinates

Usage#

crossSectionGenePlot(
  gobject = NULL,
  spat_loc_name = "raw",
  crossSection_obj = NULL,
  name = NULL,
  spatial_network_name = "Delaunay_network",
  default_save_name = "crossSectionGenePlot",
  ...
)

Arguments#

Argument

Description

gobject

giotto object

spat_loc_name

name of spatial locations

crossSection_obj

crossSection object

name

name of virtual cross section to use

spatial_network_name

name of spatial network to use

default_save_name

default save name for saving, don’t change, change save_name in save_param

...

parameters for spatGenePlot2D

Details#

Description of parameters.

Value#

ggplot

Seealso#

`spatGenePlot3D <#spatgeneplot3d>`__ and `spatGenePlot2D <#spatgeneplot2d>`__