simulateOneGenePatternGiottoObject#
Last Updated: Oct 02, 2023
Description#
Create a simulated spatial pattern for one selected gnee
Usage#
simulateOneGenePatternGiottoObject(
gobject,
pattern_name = "pattern",
pattern_cell_ids = NULL,
gene_name = NULL,
spatial_prob = 0.95,
gradient_direction = NULL,
show_pattern = TRUE,
pattern_colors = c(`in` = "green", out = "red"),
...
)
Arguments#
|
giotto object |
|
name of spatial pattern |
|
cell ids that make up the spatial pattern |
|
selected gene |
|
probability for a high expressing gene value to be part of the spatial pattern |
|
direction of gradient |
|
show the discrete spatial pattern |
|
2 color vector for the spatial pattern |
|
additional parameters for (re-)normalizing |
Value#
Reprocessed Giotto object for which one gene has a forced spatial pattern