combineMetadata#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/auxiliary_giotto.R#L3475

Description#

This function combines the cell metadata with spatial locations and enrichment results from `runSpatialEnrich <#runspatialenrich>`__

Usage#

combineMetadata(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  spat_loc_name = "raw",
  spat_enr_names = NULL
)

Arguments#

Argument

Description

gobject

Giotto object

spat_unit

spatial unit

feat_type

feature type

spat_loc_name

name of spatial locations to include

spat_enr_names

names of spatial enrichment results to include

Value#

Extended cell metadata in data.table format.