combineMetadata#

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Last Updated: Mar 11, 2023

Description#

This function combines the cell metadata with spatial locations and enrichment results from runSpatialEnrich

Usage#

combineMetadata(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  spat_loc_name = "raw",
  spat_enr_names = NULL,
  verbose = TRUE
)

Arguments#

gobject

Giotto object

spat_unit

spatial unit

feat_type

feature type

spat_loc_name

name of spatial locations to include

spat_enr_names

names of spatial enrichment results to include

verbose

verbosity

Value#

Extended cell metadata in data.table format.