spatialAEH#
Last Updated: Oct 02, 2023
Description#
Compute spatial variable genes with spatialDE method
Usage#
spatialAEH(
gobject = NULL,
feat_type = NULL,
spat_unit = NULL,
spat_loc_name = "raw",
SpatialDE_results = NULL,
name_pattern = "AEH_patterns",
expression_values = c("raw", "normalized", "scaled", "custom"),
pattern_num = 6,
l = 1.05,
python_path = NULL,
return_gobject = TRUE
)
Arguments#
|
Giotto object |
|
feature type |
|
spatial unit |
|
name for spatial locations |
|
results of |
|
name for the computed spatial patterns |
|
gene expression values to use |
|
number of spatial patterns to look for |
|
lengthscale |
|
specify specific path to python if required |
|
show plot |
Details#
This function is a wrapper for the SpatialAEH method implemented in the …
Value#
An updated giotto object