crossSectionGenePlot3D#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/cross_section.R#L684

Description#

Visualize cells and gene expression in a virtual cross section according to spatial coordinates

Usage#

crossSectionGenePlot3D(
  gobject,
  crossSection_obj = NULL,
  name = NULL,
  spatial_network_name = "Delaunay_network",
  other_cell_color = alpha("lightgrey", 0),
  default_save_name = "crossSectionGenePlot3D",
  ...
)

Arguments#

Argument

Description

gobject

giotto object

crossSection_obj

cross section object as alternative input. default = NULL.

name

name of virtual cross section to use

spatial_network_name

name of spatial network to use

other_cell_color

color of cells outside the cross section. default = transparent.

default_save_name

default save name for saving, don’t change, change save_name in save_param

...

parameters for spatGenePlot3D

Details#

Description of parameters.

Value#

ggplot