crossSectionGenePlot3D#

Last Updated: Jan 14, 2025

Description#

Visualize cells and gene expression in a virtual cross section according to spatial coordinates

Usage#

crossSectionGenePlot3D(
  gobject,
  crossSection_obj = NULL,
  name = NULL,
  spatial_network_name = "Delaunay_network",
  other_cell_color = alpha("lightgrey", 0),
  default_save_name = "crossSectionGenePlot3D",
  ...
)

Arguments#

`gobject`	giotto object
`crossSection_obj`	cross section object as alternative input. default = NULL.
`name`	name of virtual cross section to use
`spatial_network_name`	name of spatial network to use
`other_cell_color`	color of cells outside the cross section. default = transparent.
`default_save_name`	default save name for saving, don’t change, change save_name in save_param
`...`	parameters for spatGenePlot3D

Details#

Description of parameters.

Value#

ggplot