annotateSpatialNetwork#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/spatial_structures.R#L1686

Description#

Annotate spatial network with cell metadata information.

Usage#

annotateSpatialNetwork(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  spatial_network_name = "Delaunay_network",
  cluster_column,
  create_full_network = FALSE
)

Arguments#

Argument

Description

gobject

giotto object

spat_unit

spatial unit

feat_type

feature type

spatial_network_name

name of spatial network to use

cluster_column

name of column to use for clusters

create_full_network

convert from reduced to full network representation

Value#

annotated network in data.table format