WEBSITE UPDATE! PLEASE USE THE NEW WEBSITE#

This website is outdated and will be terminated on May 1st 2025. Please visit www.giottosuite.com for more information.

Tutorials#

Most of these tutorials use data which is stored within a helper extension of Giotto Suite, GiottoData. To run these tutorials, please first install this small package. Please note that some of the tutorials do require a manual download from an external site.

devtools::install_github("drieslab/GiottoData")

Sequencing-based#

Mouse E12.5_E1S3

_images/Stereo-seq.png

Seq-Scope Mouse Liver

_images/Seqscope_Icon.png

Visium Mouse Kidney

_images/visium_kidney_image_summary.png

Visium Mouse Brain

_images/visium_brain_image_summary.png

Visium Integration

_images/visium_prostate_summary.png

CytAssist Human Lung Cancer

https://github.com/PratishthaGuckhool/Giotto_site_suite/blob/master/inst/images/cytassist_visium_lungcancer/21-spatPlot2D.png?raw=true

Visium CytAssist Human Glioblastoma

RNA Multiplex Imaging#

_images/LeidenSpatPlot6.png

_images/xenium_breast_summary.png

_images/nanostring_overview_icon.png

_images/merFISH_hypoth_image_summary.png

_images/vizgen_brain_summary.png

seqFISH

_images/mini_seqFISH.png

seqFISH+

_images/cortex_image_summary.png

_images/osmFISH_SS_cortex_image_summary.png

_images/resolve_bioscience_cancer_summary.png

Protein Multiplexing#

_images/CODEX_spleen_image_summary.png

Single Cell RNA Sequencing#

Prostate

_images/SC_RNAseq_standard.png

Prostate Integration

_images/SC_RNAseq_integration.png

Other Technologies#

_images/coming_soon_summary.png