combCCcom#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/spatial_interaction.R#L2798

Description#

Combine spatial and expression based cell-cell communication data.tables

Usage#

combCCcom(
  spatialCC,
  exprCC,
  min_lig_nr = 3,
  min_rec_nr = 3,
  min_padj_value = 1,
  min_log2fc = 0,
  min_av_diff = 0,
  detailed = FALSE
)

Arguments#

Argument

Description

spatialCC

spatial cell-cell communication scores

exprCC

expression cell-cell communication scores

min_lig_nr

minimum number of ligand cells

min_rec_nr

minimum number of receptor cells

min_padj_value

minimum adjusted p-value

min_log2fc

minimum log2 fold-change

min_av_diff

minimum average expression difference

detailed

detailed option used with `spa tCellCellcom <#spatcellcellcom>`__ (default = FALSE)

Value#

combined data.table with spatial and expression communication data