combCCcom#

Last Updated: Jan 29, 2024

Description#

Combine spatial and expression based cell-cell communication data.tables

Usage#

combCCcom(
  spatialCC,
  exprCC,
  min_lig_nr = 3,
  min_rec_nr = 3,
  min_padj_value = 1,
  min_log2fc = 0,
  min_av_diff = 0,
  detailed = FALSE
)

Arguments#

spatialCC

spatial cell-cell communication scores

exprCC

expression cell-cell communication scores

min_lig_nr

minimum number of ligand cells

min_rec_nr

minimum number of receptor cells

min_padj_value

minimum adjusted p-value

min_log2fc

minimum log2 fold-change

min_av_diff

minimum average expression difference

detailed

detailed option used with spatCellCellcom (default = FALSE)

Value#

combined data.table with spatial and expression communication data