subsetGiottoLocs#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/auxiliary_giotto.R#L1184

Description#

Subsets Giotto object based on spatial locations

Usage#

subsetGiottoLocs(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  spat_loc_name = NULL,
  x_max = NULL,
  x_min = NULL,
  y_max = NULL,
  y_min = NULL,
  z_max = NULL,
  z_min = NULL,
  poly_info = "cell",
  return_gobject = TRUE,
  verbose = FALSE
)

Arguments#

Argument

Description

gobject

giotto object

spat_unit

spatial unit

feat_type

feature type to use

spat_loc_name

name of spatial locations to use

``x_max, x_min,

y_max, y_min, z_max, z_min``

minimum and maximum x, y, and z coordinates to subset to

poly_info

polygon information to use

return_gobject

return Giotto object

verbose

be verbose

Details#

Subsets a Giotto based on spatial locations and for one provided spatial unit if return_gobject = FALSE, then a filtered combined metadata data.table will be returned

Value#

giotto object