Get spatial grid#

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Last Updated: Mar 11, 2023

Description#

Function to get spatial grid

Usage#

get_spatialGrid(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  name = NULL,
  return_grid_Obj = FALSE,
  set_defaults = TRUE
)

Arguments#

gobject

giotto object

spat_unit

spatial unit (e.g. “cell”)

feat_type

feature type (e.g. “rna”, “dna”, “protein”)

name

name of spatial grid

return_grid_Obj

return grid object (default = FALSE)

set_defaults

set default spat_unit and feat_type. Change to FALSE only when expression and spat_info are not expected to exist.

See Also#

Other spatial grid data accessor functions: set_spatialGrid()

Other functions to get data from giotto object: get_NearestNetwork(), get_dimReduction(), get_expression_values(), get_feature_info(), get_giottoImage(), get_polygon_info(), get_spatialNetwork(), get_spatial_enrichment(), get_spatial_locations()