get_polygon_info#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/accessors.R#L931

Description#

Get giotto polygon spatVector

Usage#

get_polygon_info(
  gobject,
  polygon_name = NULL,
  polygon_overlap = NULL,
  return_giottoPolygon = FALSE
)

Arguments#

Argument

Description

gobject

giotto object

polygon_name

name of polygons. Default “cell?

polygon_overlap

include polygon overlap information

return_giottoPolygon

(Defaults to FALSE) Return as giottoPolygon S4 object

Seealso#

Other polygon info data accessor functions: `set_polygon_info <#setpolygoninfo>`__

Other functions to get data from giotto object: `get_NearestNetwork <#getnearestnetwork>`__ , `get_dimReduction <#getdimreduction>`__ , `get_expression_values <#getexpressionvalues>`__ , `get_feature_info <#getfeatureinfo>`__ , `get_giottoImage <#getgiottoimage>`__ , `get_spatialGrid <#getspatialgrid>`__ , `get_spatialNetwork <#getspatialnetwork>`__ , `get_spatial_enrichment <#getspatialenrichment>`__ , `get_spatial_locations <#getspatiallocations>`__