processGiotto#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/auxiliary_giotto.R#L2391

Description#

Wrapper for the different Giotto object processing functions

Usage#

processGiotto(
  gobject,
  filter_params = list(),
  norm_params = list(),
  stat_params = list(),
  adjust_params = list(),
  verbose = TRUE
)

Arguments#

Argument

Description

gobject

giotto object

filter_params

additional parameters to filterGiotto

norm_params

additional parameters to normalizeGiotto

stat_params

additional parameters to addStatistics

adjust_params

additional parameters to adjustGiottoMatrix; set to NULL if not required

verbose

be verbose (default is TRUE)

Details#

See `filterGiotto <#filtergiotto>`__ , `normalizeGiotto <#normalizegiotto>`__ , `addStatistics <#addstatistics>`__ , and `adjustGiottoMatrix <#adjustgiottomatrix>`__ . For more information about the different parameters in each step. If you do not provide them it will use the default values. If no adjustment is required, adjust_params must be set to NULL

Value#

giotto object