processGiotto#

Last Updated: Oct 02, 2023

Description#

Wrapper for the different Giotto object processing functions

Usage#

processGiotto(
  gobject,
  filter_params = list(),
  norm_params = list(),
  stat_params = list(),
  adjust_params = list(),
  verbose = TRUE
)

Arguments#

`gobject`	giotto object
`filter_params`	additional parameters to filterGiotto
`norm_params`	additional parameters to normalizeGiotto
`stat_params`	additional parameters to addStatistics
`adjust_params`	additional parameters to adjustGiottoMatrix; set to NULL if not required
`verbose`	be verbose (default is TRUE)

Details#

See filterGiotto, normalizeGiotto, addStatistics, and adjustGiottoMatrix. For more information about the different parameters in each step. If you do not provide them it will use the default values. If no adjustment is required, adjust_params must be set to NULL

Value#

giotto object