processGiotto#
Last Updated: Jan 14, 2025
Description#
Wrapper for the different Giotto object processing functions
Usage#
processGiotto(
gobject,
filter_params = list(),
norm_params = list(),
stat_params = list(),
adjust_params = list(),
verbose = TRUE
)
Arguments#
|
giotto object |
|
additional parameters to filterGiotto |
|
additional parameters to normalizeGiotto |
|
additional parameters to addStatistics |
|
additional parameters to adjustGiottoMatrix; set to NULL if not required |
|
be verbose (default is TRUE) |
Details#
See filterGiotto
, normalizeGiotto
, addStatistics
, and
adjustGiottoMatrix
. For more information about the different
parameters in each step. If you do not provide them it will use the
default values. If no adjustment is required, adjust_params must be set
to NULL
Value#
giotto object