plotICF#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/spatial_interaction_visuals.R#L1630

Description#

Create barplot to visualize interaction changed features

Usage#

plotICF(
  gobject,
  icfObject,
  source_type,
  source_markers,
  ICF_feats,
  cell_color_code = NULL,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "plotICF"
)

Arguments#

Argument

Description

gobject

giotto object

icfObject

ICF (interaction changed feature) score object

source_type

cell type of the source cell

source_markers

markers for the source cell type

ICF_feats

named character vector of ICF features

cell_color_code

cell color code for the interacting cell types

show_plot

show plots

return_plot

return plotting object

save_plot

directly save the plot [boolean]

save_param

list of saving parameters from `all_plots_save_f unction <#allplotssavefunction>`__

default_save_name

default save name for saving, don’t change, change save_name in save_param

Value#

plot