plotGiottoImage#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/images.R#L2221

Description#

Display a giotto image in the viewer panel. Image object to plot can be specified by providing the giotto object containing the image ( gobject ), the image object name ( image_name ), and the image object type ( image_type ). Alternatively, image objects can be directly plotted through their respective associated params.

Usage#

plotGiottoImage(
  gobject = NULL,
  image_name = NULL,
  image_type = NULL,
  giottoImage = NULL,
  giottoLargeImage = NULL,
  largeImage_crop_params_list = NULL,
  largeImage_max_intensity = NULL,
  ...
)

Arguments#

Argument

Description

gobject

gobject containing giotto image object

image_name

name of giotto image object

image_type

type of giotto image object to plot

giottoImage

giottoImage object to plot directly

giottoLargeImage

giottoLargeImage object to plot directly

`` largeImage_crop_params_list``

(optional) named list of params for focusing on a specified region of a giottoLargeImage.

largeImage_max_intensity

(optional) assign override value to treat as maximum intensity in color scale when plotting giottoLargeImage

...

additional params to pass to image object specific plotting functions

See also#

Other basic image functions: addGiottoImage reconnectGiottoImage updateGiottoImage