makeSignMatrixPAGE#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/spatial_enrichment.R#L14

Description#

Function to convert a list of signature genes (e.g. for cell types or processes) into a binary matrix format that can be used with the PAGE enrichment option. Each cell type or process should have a vector of cell-type or process specific genes. These vectors need to be combined into a list (sign_list). The names of the cell types or processes that are provided in the list need to be given (sign_names).

Usage#

makeSignMatrixPAGE(sign_names, sign_list)

Arguments#

Argument

Description

sign_names

vector with names for each provided gene signature

sign_list

list of genes (signature)

Value#

matrix

Seealso#

`PAGEEnrich <#pageenrich>`__