getSpatialDataset#
- Date:
2022-10-06
Description#
This package will automatically download the spatial locations and expression matrix for the chosen dataset. These files are already in the right format to create a Giotto object. If wget is installed on your machine, you can add ‘method = wget’ to the parameters to download files faster.
Usage#
getSpatialDataset(
dataset = c("ST_OB1", "ST_OB2", "codex_spleen", "cycif_PDAC", "starmap_3D_cortex",
"osmfish_SS_cortex", "merfish_preoptic", "mini_seqFISH", "seqfish_SS_cortex",
"seqfish_OB", "slideseq_cerebellum", "Human_PCa_scRNAseq", "Mouse_brain_scRNAseq"),
directory = getwd(),
...
)
Arguments#
Argument |
Description |
---|---|
|
dataset to download |
|
directory to save the data to |
|
additional parameters to `` download.file` <#download.file>`__ |