addGiottoLargeImage#

Last Updated: Oct 02, 2023

Description#

Adds giotto image objects to your giotto object

Usage#

addGiottoLargeImage(
  gobject = NULL,
  largeImages = NULL,
  spat_loc_name = NULL,
  scale_factor = NULL,
  negative_y = TRUE,
  verbose = TRUE
)

Arguments#

gobject

giotto object

largeImages

list of giottoLargeImage objects

spat_loc_name

provide spatial location slot in Giotto to align images. (optional)

scale_factor

provide scale of image pixel dimensions relative to spatial coordinates.

negative_y

map image to negative y spatial values if TRUE during automatic alignment. Meaning that origin is in upper left instead of lower left.

verbose

be verbose

Value#

an updated Giotto object with access to the list of images