seuratToGiotto#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/interoperability.R#L379

Description#

Convert a Seurat object to a Giotto object

Usage#

seuratToGiotto(
  sobject,
  spatial_assay = "Spatial",
  dim_reduction = c("pca", "umap"),
  subcellular_assay = "Vizgen"
)

Arguments#

Argument

Description

sobject

Input Seurat object to convert to Giotto object

spatial_assay

Specify name of the spatial assay slot in Seurat. Default is "Spatial" .

dim_reduction

Specify which dimensional reduction computations to fetch from input Seurat object. Default is "c('pca', 'umap')" .

subcellular_assay

Specify name of the subcellular assay in input object. Default is "Vizgen" .

Value#

A Giotto object converted from Seurat object with all computations stored in it.