Convert a Seurat object to a Giotto object#
Last Updated: Sep 07, 2023
Description#
Convert a Seurat object to a Giotto object
Usage#
seuratToGiotto(
sobject,
spatial_assay = "Spatial",
dim_reduction = c("pca", "umap"),
subcellular_assay = "Vizgen"
)
Arguments#
|
Input Seurat object to convert to Giotto object |
|
Specify name of the spatial assay
slot in Seurat. Default is
|
|
Specify which dimensional
reduction computations to fetch
from input Seurat object. Default
is |
|
Specify name of the subcellular
assay in input object. Default is
|
Value#
A Giotto object converted from Seurat object with all computations stored in it.