showSpatialCorFeats#

Last Updated: Sep 07, 2023

Description#

Shows and filters spatially correlated features

Usage#

showSpatialCorFeats(
  spatCorObject,
  use_clus_name = NULL,
  selected_clusters = NULL,
  feats = NULL,
  min_spat_cor = 0.5,
  min_expr_cor = NULL,
  min_cor_diff = NULL,
  min_rank_diff = NULL,
  show_top_feats = NULL
)

Arguments#

`spatCorObject`	spatial correlation object
`use_clus_name`	cluster information to show
`selected_clusters`	subset of clusters to show
`feats`	subset of features to show
`min_spat_cor`	filter on minimum spatial correlation
`min_expr_cor`	filter on minimum single-cell expression correlation
`min_cor_diff`	filter on minimum correlation difference (spatial vs expression)
`min_rank_diff`	filter on minimum correlation rank difference (spatial vs expression)
`show_top_feats`	show top features per gene

Value#

data.table with filtered information