combineInteractionChangedFeats#
Last Updated: Jan 14, 2025
Description#
Combine ICF scores in a pairwise manner.
Usage#
combineInteractionChangedFeats(
icfObject,
selected_ints = NULL,
selected_feats = NULL,
specific_feats_1 = NULL,
specific_feats_2 = NULL,
min_cells = 5,
min_int_cells = 3,
min_fdr = 0.05,
min_spat_diff = 0,
min_log2_fc = 0.5,
do_parallel = TRUE,
verbose = T
)
Arguments#
|
ICF (interaction changed feat) score object |
|
subset of selected cell-cell interactions (optional) |
|
subset of selected Features (optional) |
|
specific Featureset combo (need to position match specific_feats_2) |
|
specific Featureset combo (need to position match specific_feats_1) |
|
minimum number of target cell type |
|
minimum number of interacting cell type |
|
minimum adjusted p-value |
|
minimum absolute spatial expression difference |
|
minimum absolute log2 fold-change |
|
run calculations in parallel with mclapply |
|
verbose |
Value#
combIcfObject that contains the filtered differential feature scores