createMetafeats#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/auxiliary_giotto.R#L3574

Description#

This function creates an average metafeat/metagene/module for clusters.

Usage#

createMetafeats(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  expression_values = c("normalized", "scaled", "custom"),
  feat_clusters,
  name = "metafeat",
  return_gobject = TRUE
)

Arguments#

Argument

Description

gobject

Giotto object

spat_unit

spatial unit

feat_type

feature type

expression_values

expression values to use

feat_clusters

numerical vector with features as names

name

name of the metagene results

return_gobject

return giotto object

Details#

An example for the ‘gene_clusters’ could be like this: cluster_vector = c(1, 1, 2, 2); names(cluster_vector) = c(‘geneA’, ‘geneB’, ‘geneC’, ‘geneD’)

Value#

giotto object