createMetafeats#

Last Updated: Nov 17, 2023

Description#

This function creates an average metafeat/metagene/module for clusters.

Usage#

createMetafeats(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  expression_values = c("normalized", "scaled", "custom"),
  feat_clusters,
  name = "metafeat",
  return_gobject = TRUE
)

Arguments#

`gobject`	Giotto object
`spat_unit`	spatial unit
`feat_type`	feature type
`expression_values`	expression values to use
`feat_clusters`	numerical vector with features as names
`name`	name of the metagene results
`return_gobject`	return giotto object

Details#

An example for the ‘gene_clusters’ could be like this: cluster_vector = c(1, 1, 2, 2); names(cluster_vector) = c(‘geneA’, ‘geneB’, ‘geneC’, ‘geneD’)

Value#

giotto object