createSpatialGrid#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/spatial_structures.R#L2173

Description#

Create a spatial grid using the default method

Usage#

createSpatialGrid(
  gobject,
  spat_unit = NULL,
  spat_loc_name = "raw",
  name = NULL,
  method = c("default"),
  sdimx_stepsize = NULL,
  sdimy_stepsize = NULL,
  sdimz_stepsize = NULL,
  minimum_padding = 1,
  return_gobject = TRUE
)

Arguments#

Argument

Description

gobject

giotto object

spat_unit

spatial unit

spat_loc_name

spatial location name

name

name for spatial grid

method

method to create a spatial grid

sdimx_stepsize

stepsize along the x-axis

sdimy_stepsize

stepsize along the y-axis

sdimz_stepsize

stepsize along the z-axis

minimum_padding

minimum padding on the edges

return_gobject

boolean: return giotto object (default = TRUE)

Details#

Creates a spatial grid with defined x, y (and z) dimensions. The dimension units are based on the provided spatial location units.

  • default method: list(list(“createSpatialDefaultGrid?))

Value#

giotto object with updated spatial grid slot