Get spatial enrichment#

Last Updated: Jan 14, 2025

Description#

Function to get a spatial enrichment data.table

Usage#

get_spatial_enrichment(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  enrichm_name = "DWLS",
  output = c("spatEnrObj", "data.table"),
  copy_obj = TRUE,
  set_defaults = TRUE
)

Arguments#

`gobject`	giotto object
`spat_unit`	spatial unit (e.g. “cell”)
`feat_type`	feature type (e.g. “rna”, “dna”, “protein”)
`enrichm_name`	name of spatial enrichment results. Default “DWLS”
`output`	what format in which to get information (e.g. “data.table”)
`set_defaults`	set default spat_unit and feat_type. Change to FALSE only when expression and spat_info are not expected to exist.

Value#

data.table with fractions

See Also#

Other spatial enrichment data accessor functions: set_spatial_enrichment()

Other functions to get data from giotto object: get_NearestNetwork(), get_dimReduction(), get_expression_values(), get_feature_info(), get_giottoImage(), get_polygon_info(), get_spatialGrid(), get_spatialNetwork(), get_spatial_locations()