FAQs#
Frequently Asked Questions#
Installation#
First time R package installation
Manual python installation
Data Availability#
Checkout RubD/spatial-datasets to find already preprocessed datasets
Checkout SpatialDB to download expression matrix and location information
# choose your directory
my_working_dir = getwd()
# standard download data to working directory
getSpatialDataset(dataset = 'merfish_preoptic', directory = my_working_dir)
# use wget to download data to working directory (much faster)
getSpatialDataset(dataset = 'merfish_preoptic', directory = my_working_dir, method = 'wget')
# avoid certification issues with wget
getSpatialDataset(dataset = 'merfish_preoptic', directory = my_working_dir, method = 'wget', extra = '--no-check-certificate')
# see download.file for more options
?download.file