calculateMetaTable#

Last Updated: Oct 02, 2023

Description#

calculates the average gene expression for one or more (combined) annotation columns.

Usage#

calculateMetaTable(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  expression_values = c("normalized", "scaled", "custom"),
  metadata_cols = NULL,
  selected_feats = NULL,
  selected_genes = NULL
)

Arguments#

`gobject`	giotto object
`spat_unit`	spatial unit
`feat_type`	feature type
`expression_values`	expression values to use
`metadata_cols`	annotation columns found in `pDataDT(gobject)`
`selected_feats`	subset of features to use
`selected_genes`	subset of genes to use (deprecated)

Value#

data.table with average expression values for each gene per (combined) annotation