calculateMetaTable#
Last Updated: Oct 02, 2023
Description#
calculates the average gene expression for one or more (combined) annotation columns.
Usage#
calculateMetaTable(
gobject,
spat_unit = NULL,
feat_type = NULL,
expression_values = c("normalized", "scaled", "custom"),
metadata_cols = NULL,
selected_feats = NULL,
selected_genes = NULL
)
Arguments#
|
giotto object |
|
spatial unit |
|
feature type |
|
expression values to use |
|
annotation columns found in
|
|
subset of features to use |
|
subset of genes to use (deprecated) |
Value#
data.table with average expression values for each gene per (combined) annotation