showPattern2D#

Last Updated: Jan 29, 2024

Description#

show patterns for 2D spatial data

Usage#

showPattern2D(
  gobject,
  spatPatObj,
  dimension = 1,
  trim = c(0.02, 0.98),
  background_color = "white",
  grid_border_color = "grey",
  show_legend = T,
  point_size = 1,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "showPattern2D"
)

Arguments#

`gobject`	giotto object
`spatPatObj`	Output from detectSpatialPatterns
`dimension`	dimension to plot
`trim`	Trim ends of the PC values.
`background_color`	background color for plot
`grid_border_color`	color for grid
`show_legend`	show legend of ggplot
`point_size`	size of points
`show_plot`	show plot
`return_plot`	return ggplot object
`save_plot`	directly save the plot [boolean]
`save_param`	list of saving parameters, see `showSaveParameters`
`default_save_name`	default save name for saving, don’t change, change save_name in save_param

Value#

ggplot