Getting Started

Giotto Suite is installed via R but there are required Python modules which must be installed in order for Giotto Suite to function properly. Below are the instructions for both the installation of the Giotto Suite package (Step 1) and required Python environment (Step 2).

Requirements

Installation

Step 1: Install Giotto Suite

library(remotes)
remotes::install_github("RubD/Giotto@suite")

Step 2: Install the Giotto Python environment

This step only needs to be run once. Giotto Suite will automatically detect the environment in the future.

library(Giotto)
installGiottoEnvironment()

Encountering errors? Checkout out the Common Errors and Solutions for installation troubleshooting help.

Learn more about Giotto Suite

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