addCellStatistics#
Last Updated: Jan 14, 2025
Description#
adds cells statistics to the giotto object
Usage#
addCellStatistics(
gobject,
feat_type = NULL,
spat_unit = NULL,
expression_values = c("normalized", "scaled", "custom"),
detection_threshold = 0,
return_gobject = TRUE
)
Arguments#
|
giotto object |
|
feature type |
|
spatial unit |
|
expression values to use |
|
detection threshold to consider a gene detected |
|
boolean: return giotto object (default = TRUE) |
Details#
This function will add the following statistics to cell metadata:
nr_feats: Denotes in how many features are detected per cell
perc_feats: Denotes what percentage of features is detected per cell
total_expr: Shows the total sum of feature expression per cell
Value#
giotto object if return_gobject = TRUE