Multi omics integration with WNN#

Last Updated: Oct 02, 2023

Description#

Multi omics integration with WNN

Usage#

runWNN(
  gobject,
  spat_unit = "cell",
  modality_1 = "rna",
  modality_2 = "protein",
  pca_name_modality_1 = "rna.pca",
  pca_name_modality_2 = "protein.pca",
  k = 20
)

Arguments#

`gobject`	A Giotto object with individual PCA modalities pre-calculated
`spat_unit`	spatial unit
`modality_1`	modality 1 name. Default = “rna”
`modality_2`	modality 2 name. Default = “protein”
`k`	k number, default = 20

Value#

A Giotto object with integrated UMAP (integrated.umap) within the dimension_reduction slot and Leiden clusters (integrated_leiden_clus) in the cellular metadata.