Multi omics integration with WNN#

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Last Updated: Mar 11, 2023

Description#

Multi omics integration with WNN

Usage#

runWNN(
  gobject,
  spat_unit = "cell",
  modality_1 = "rna",
  modality_2 = "protein",
  pca_name_modality_1 = "rna.pca",
  pca_name_modality_2 = "protein.pca",
  k = 20
)

Arguments#

gobject

A Giotto object with individual PCA modalities pre-calculated

spat_unit

spatial unit

modality_1

modality 1 name. Default = “rna”

modality_2

modality 2 name. Default = “protein”

k

k number, default = 20

Value#

A Giotto object with integrated UMAP (integrated.umap) within the dimension_reduction slot and Leiden clusters (integrated_leiden_clus) in the cellular metadata.