Multi omics integration with WNN#
Last Updated: Oct 02, 2023
Description#
Multi omics integration with WNN
Usage#
runWNN(
gobject,
spat_unit = "cell",
modality_1 = "rna",
modality_2 = "protein",
pca_name_modality_1 = "rna.pca",
pca_name_modality_2 = "protein.pca",
k = 20
)
Arguments#
|
A Giotto object with individual PCA modalities pre-calculated |
|
spatial unit |
|
modality 1 name. Default = “rna” |
|
modality 2 name. Default = “protein” |
|
k number, default = 20 |
Value#
A Giotto object with integrated UMAP (integrated.umap) within the dimension_reduction slot and Leiden clusters (integrated_leiden_clus) in the cellular metadata.