get10Xmatrix_h5#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/general_help.R#L1081

Description#

This function creates an expression matrix from a 10X h5 file path

Usage#

get10Xmatrix_h5(path_to_data, gene_ids = c("symbols", "ensembl"))

Arguments#

Argument

Description

path_to_data

path to the 10X .h5 file

gene_ids

use gene symbols (default) or ensembl ids for the gene expression matrix

Details#

If the .h5 10x file has multiple modalities (e.g. RNA and protein), multiple matrices will be returned

Value#

(list of) sparse expression matrix from 10X