plotCombineCCcom#
Last Updated: Jan 14, 2025
Description#
Create visualization for combined (pairwise) cell proximity gene scores
Usage#
plotCombineCCcom(
gobject,
combCCcom,
selected_LR = NULL,
selected_cell_LR = NULL,
detail_plot = T,
simple_plot = F,
simple_plot_facet = c("interaction", "genes"),
facet_scales = "fixed",
facet_ncol = length(selected_LR),
facet_nrow = length(selected_cell_LR),
colors = c("#9932CC", "#FF8C00"),
show_plot = NA,
return_plot = NA,
save_plot = NA,
save_param = list(),
default_save_name = "plotCombineCCcom"
)
Arguments#
|
giotto object |
|
combined communcation scores, output from combCCcom() |
|
selected ligand-receptor pair |
|
selected cell-cell interaction pair for ligand-receptor pair |
|
show detailed info in both interacting cell types |
|
show a simplified plot |
|
facet on interactions or genes with simple plot |
|
ggplot facet scales paramter |
|
ggplot facet ncol parameter |
|
ggplot facet nrow parameter |
|
vector with two colors to use |
|
show plots |
|
return plotting object |
|
directly save the plot [boolean] |
|
list of saving parameters from
|
|
default save name for saving, don’t change, change save_name in save_param |
Value#
ggplot