comparePolygonExpression#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/spatial_visuals.R#L10262

Description#

Compare gene expression between polygon areas

Usage#

comparePolygonExpression(
  gobject,
  spat_unit = "cell",
  feat_type = "rna",
  selected_feats = "top_genes",
  expression_values = "normalized",
  method = "scran",
  ...
)

Arguments#

Argument

Description

gobject

A Giotto object

spat_unit

spatial unit (e.g. “cell?)

feat_type

feature type (e.g. “rna?, “dna?, “protein?)

selected_feats

vector of selected features to plot

expression_values

gene expression values to use (“normalized?, “scaled?, “custom?)

method

method to use to detect differentially expressed feats (“scran?, “gini?, “mast?)

list()

Arguments passed to Heatmap

Value#

A ComplexHeatmap::Heatmap object