Compare gene expression between polygon areas#
Last Updated: Oct 02, 2023
Description#
Compare gene expression between polygon areas
Usage#
comparePolygonExpression(
gobject,
polygon_name = "selections",
spat_unit = "cell",
feat_type = "rna",
selected_feats = "top_genes",
expression_values = "normalized",
method = "scran",
...
)
Arguments#
|
A Giotto object |
|
name of polygon selections |
|
spatial unit (e.g. “cell”) |
|
feature type (e.g. “rna”, “dna”, “protein”) |
|
vector of selected features to plot |
|
gene expression values to use (“normalized”, “scaled”, “custom”) |
|
method to use to detect differentially expressed feats (“scran”, “gini”, “mast”) |
|
Arguments passed to Heatmap |
Value#
A ComplexHeatmap::Heatmap object