Set spatial grid#
Last Updated: Oct 02, 2023
Description#
Function to set a spatial grid
Usage#
set_spatialGrid(
gobject,
spatial_grid,
spat_unit = NULL,
feat_type = NULL,
name = NULL,
verbose = TRUE,
set_defaults = TRUE
)
Arguments#
|
giotto object |
|
spatial grid object |
|
spatial unit (e.g. “cell”) |
|
feature type (e.g. “rna”, “dna”, “protein”) |
|
name of spatial grid |
|
be verbose |
|
set default spat_unit and feat_type. Change to FALSE only when expression and spat_info are not expected to exist. |
Value#
giotto object
See Also#
Other spatial grid data accessor functions: get_spatialGrid()
Other functions to set data in giotto object: get_cell_id()
,
get_feat_id()
, set_NearestNetwork()
, set_cell_id()
,
set_cell_metadata()
, set_dimReduction()
,
set_expression_values()
, set_feat_id()
, set_feature_info()
,
set_feature_metadata()
, set_giottoImage()
,
set_polygon_info()
, set_spatialNetwork()
,
set_spatial_enrichment()
, set_spatial_locations()