subsetGiotto#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/auxiliary_giotto.R#L962

Description#

Subsets Giotto object including previous analyses.

Usage#

subsetGiotto(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  cell_ids = NULL,
  feat_ids = NULL,
  gene_ids = NULL,
  poly_info = NULL,
  x_max = NULL,
  x_min = NULL,
  y_max = NULL,
  y_min = NULL,
  verbose = TRUE,
  toplevel_params = 2
)

Arguments#

Argument

Description

gobject

giotto object

spat_unit

spatial unit

feat_type

feature type to use

cell_ids

cell IDs to keep

feat_ids

feature IDs to keep

gene_ids

deprecated, use feat_ids

poly_info

polygon information to use

` x_max, x_min, y_max, y_min`

minimum and maximum x and y coordinates to keep for feature coordinates

verbose

be verbose

toplevel_params

parameters to extract

Details#

Subsets a Giotto object for a specific spatial unit and feature type

Value#

giotto object