subsetGiotto#
Last Updated: Jan 14, 2025
Description#
Subsets Giotto object including previous analyses.
Usage#
subsetGiotto(
gobject,
spat_unit = NULL,
feat_type = NULL,
cell_ids = NULL,
feat_ids = NULL,
gene_ids = NULL,
poly_info = NULL,
all_spat_units = TRUE,
all_feat_types = TRUE,
x_max = NULL,
x_min = NULL,
y_max = NULL,
y_min = NULL,
verbose = TRUE,
toplevel_params = 2
)
Arguments#
|
giotto object |
|
spatial unit |
|
feature type to use |
|
cell IDs to keep |
|
feature IDs to keep |
|
polygon information to use |
|
subset all spatial units with selected feature ids |
|
subset all feature type data with selected cell ids |
|
minimum and maximum x and y coordinates to keep for feature coordinates |
|
be verbose |
|
parameters to extract |
Details#
Subsets a Giotto object for a specific spatial unit and feature type
Value#
giotto object