makeSignMatrixRank#
Last Updated: Sep 07, 2023
Description#
Function to convert a single-cell count matrix and a corresponding single-cell cluster vector into a rank matrix that can be used with the Rank enrichment option.
Usage#
makeSignMatrixRank(
sc_matrix,
sc_cluster_ids,
ties_method = c("random", "max"),
gobject = NULL
)
Arguments#
|
matrix of single-cell RNAseq expression data |
|
vector of cluster ids |
|
how to handle rank ties |
|
if giotto object is given then only genes present in both datasets will be considered |
Value#
matrix
See Also#
rankEnrich