crossSectionPlot#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/cross_section.R#L624

Description#

Visualize cells in a virtual cross section according to spatial coordinates

Usage#

crossSectionPlot(
  gobject,
  spat_loc_name = "raw",
  feat_type = NULL,
  crossSection_obj = NULL,
  name = NULL,
  spatial_network_name = "Delaunay_network",
  default_save_name = "crossSectionPlot",
  ...
)

Arguments#

Argument

Description

gobject

giotto object

spat_loc_name

name of spatial locations

feat_type

feature type

crossSection_obj

cross section object as alternative input. default = NULL.

name

name of virtual cross section to use

spatial_network_name

name of spatial network to use

default_save_name

default save name for saving, don’t change, change save_name in save_param

...

parameters for spatPlot2D

Details#

Description of parameters.

Value#

ggplot

Seealso#

`crossSectionPlot <#crosssectionplot>`__