overlapToMatrixMultiPoly#

Last Updated: Oct 02, 2023

Description#

create a count matrix based on overlap results from calculateOverlapRaster, calculateOverlapSerial, or calculateOverlapParallel and aggregate information from multiple polygon layers (e.g. z-stacks) together

Usage#

overlapToMatrixMultiPoly(
  gobject,
  name = "raw",
  poly_info = "cell",
  feat_info = "rna",
  new_poly_info = "multi",
  return_gobject = TRUE
)

Arguments#

`gobject`	giotto object
`name`	name for the overlap count matrix
`poly_info`	vector with polygon information
`feat_info`	feature information
`new_poly_info`	name for new aggregated polygon information
`return_gobject`	return giotto object (default: TRUE)

Value#

giotto object or count matrix