filterInteractionChangedFeats#
Last Updated: Jan 14, 2025
Description#
Filter Interaction Changed Feature scores.
Usage#
filterInteractionChangedFeats(
icfObject,
min_cells = 4,
min_cells_expr = 1,
min_int_cells = 4,
min_int_cells_expr = 1,
min_fdr = 0.1,
min_spat_diff = 0.2,
min_log2_fc = 0.2,
min_zscore = 2,
zscores_column = c("cell_type", "feats"),
direction = c("both", "up", "down")
)
Arguments#
|
ICF (interaction changed feature) score object |
|
minimum number of source cell type |
|
minimum expression level for source cell type |
|
minimum number of interacting neighbor cell type |
|
minimum expression level for interacting neighbor cell type |
|
minimum adjusted p-value |
|
minimum absolute spatial expression difference |
|
minimum log2 fold-change |
|
minimum z-score change |
|
calculate z-scores over cell types or genes |
|
differential expression directions to keep |
Value#
icfObject that contains the filtered differential feature scores