Create instructions for giotto functions#

Last Updated: Jan 29, 2024

Description#

Function to set global instructions for giotto functions

Usage#

createGiottoInstructions(
  python_path = NULL,
  show_plot = NULL,
  return_plot = NULL,
  save_plot = NULL,
  save_dir = NULL,
  plot_format = NULL,
  dpi = NULL,
  units = NULL,
  height = NULL,
  width = NULL,
  is_docker = FALSE,
  plot_count = 0,
  fiji_path = NULL
)

Arguments#

`python_path`	path to python binary to use
`show_plot`	print plot to console, default = TRUE
`return_plot`	return plot as object, default = TRUE
`save_plot`	automatically save plot, dafault = FALSE
`save_dir`	path to directory where to save plots
`plot_format`	format of plots (defaults to png)
`dpi`	resolution for raster images
`units`	units of format (defaults to in)
`height`	height of plots
`width`	width of plots
`is_docker`	using docker implementation of Giotto (defaults to FALSE)
`plot_count`	[global option] start count for creating automatic unique plots
`fiji_path`	path to fiji executable

Value#

named vector with giotto instructions

See Also#

More online information can be found here https://rubd.github.io/Giotto_site/articles/instructions_and_plotting.html