spatNetwDistributionsDistance#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/spatial_structures.R#L24

Description#

This function return histograms displaying the distance distribution for each spatial k-neighbor

Usage#

spatNetwDistributionsDistance(
  gobject,
  spat_unit = NULL,
  spatial_network_name = "spatial_network",
  hist_bins = 30,
  test_distance_limit = NULL,
  ncol = 1,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "spatNetwDistributionsDistance"
)

Arguments#

Argument

Description

gobject

Giotto object

spat_unit

spatial unit

spatial_network_name

name of spatial network

hist_bins

number of binds to use for the histogram

test_distance_limit

effect of different distance threshold on k-neighbors

ncol

number of columns to visualize the histograms in

show_plot

show plot

return_plot

return ggplot object

save_plot

directly save the plot [boolean]

save_param

list of saving parameters from `all_plots_save_f unction <#allplotssavefunction>`__

default_save_name

default save name for saving, alternatively change save_name in save_param

Value#

ggplot plot