Get spatial network#

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Last Updated: Mar 11, 2023

Description#

Function to get a spatial network

Usage#

get_spatialNetwork(
  gobject,
  spat_unit = NULL,
  name = NULL,
  output = c("spatialNetworkObj", "networkDT", "networkDT_before_filter", "outputObj"),
  set_defaults = TRUE
)

Arguments#

`gobject`	giotto object
`spat_unit`	spatial unit (e.g. “cell”)
`name`	name of spatial network
`output`	object type to return as. Options: ‘spatialNetworkObj’ (default), ‘networkDT’ and ‘networkDT_before_filter’ for data.table outputs.
`set_defaults`	set default spat_unit and feat_type. Change to FALSE only when expression and spat_info are not expected to exist.

See Also#

Other spatial network data accessor functions: set_spatialNetwork()

Other functions to get data from giotto object: get_NearestNetwork(), get_dimReduction(), get_expression_values(), get_feature_info(), get_giottoImage(), get_polygon_info(), get_spatialGrid(), get_spatial_enrichment(), get_spatial_locations()