get_dimReduction#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/accessors.R#L378

Description#

Function to get a dimension reduction object

Usage#

get_dimReduction(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  reduction = c("cells", "feats"),
  reduction_method = c("pca", "umap", "tsne"),
  name = "pca",
  return_dimObj = FALSE
)

Arguments#

Value#

dim reduction coordinates (default) or dim reduction object

Seealso#

Other dimensional reduction data accessor functions: set_dimReduction

Other functions to get data from giotto object:

get_NearestNetwork

get_dimReduction

get_feature_info

get_giottoImage

get_polygon_info

get_spatialGrid

get_spatialNetwork

get_spatial_locations