plotICG#

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Last Updated: Mar 11, 2023

Description#

Create barplot to visualize interaction changed features

Usage#

plotICG(...)

Arguments#

...

Arguments passed on to plotICF

gobject

giotto object

icfObject

ICF (interaction changed feature) score object

source_type

cell type of the source cell

source_markers

markers for the source cell type

ICF_feats

named character vector of ICF features

cell_color_code

cell color code for the interacting cell types

show_plot

show plots

return_plot

return plotting object

save_plot

directly save the plot [boolean]

save_param

list of saving parameters from all_plots_save_function

default_save_name

default save name for saving, don’t change, change save_name in save_param

See Also#

plotICF