plotCombineCellProximityGenes#

Last Updated: May 20, 2025

Description#

Create visualization for combined (pairwise) ICG scores

plotCombineCellProximityGenes(...)

...

Arguments passed on to plotCombineInteractionChangedFe a ts

gobject: giotto object
combIcfObject: ICFscores, output from combineInteractionChangedFeat s()
selected_interactions: interactions to show
selected_feat_to_feat: pairwise feature combinations to show
detail_plot: show detailed info in both interacting cell types
simple_plot: show a simplified plot
simple_plot_facet: facet on interactions or feats with simple plot
facet_scales: ggplot facet scales paramter
facet_ncol: ggplot facet ncol parameter
facet_nrow: ggplot facet nrow parameter
colors: vector with two colors to use
show_plot: show plots
return_plot: return plotting object
save_plot: directly save the plot [boolean]
save_param: list of saving parameters from all_plots_save_function
default_save_name: default save name for saving, don’t change, change save_name in save_param