plotCombineCellProximityGenes#

Date

2022-10-06

https://github.com/drieslab/Giotto/tree/suite/R/spatial_interaction_visuals.R#L1833

format

latex

Description#

Create visualization for combined (pairwise) ICG scores

Usage#

plotCombineCellProximityGenes(...)

Arguments#

Argument

Description

...

Arguments passed on to `plotC ombineInteractionChangedFeats <#pl otcombineinteractionchangedfeats>`__ list(“?, ? “, list(list(list(?gobject?)), list(“giotto object?)), “?, ? “, list(list(list(?combIcfObject?)), list(“ICFscores, output from combineInteractionChangedFeats()?)), “?, ? “, list( list(list(?selected_interactions?)), list(“interactions to show?)), “?, ? “, list( list(list(?selected_feat_to_feat?)), list(“pairwise feature combinations to show?)), “?, ? “, list(list(list(?detail_plot?)), list(“show detailed info in both interacting cell types?)), “?, ? “, list(

list(list("simple_plot")), list("show a simplified plot")), "\n", "    ", list(list(list("simple_plot_facet")), list("facet on interactions or feats with simple plot")), "\n", "    ", list(list(list("facet_scales")), list("ggplot facet scales paramter")), "\n", "    ", list(list(list("facet_ncol")), list("ggplot facet ncol parameter")), "\n", "    ", list(list(list("facet_nrow")), list("ggplot facet nrow parameter")), "\n", "    ", list(list(list("colors")), list("vector with two colors to use")),
"\n", "    ", list(list(list("show_plot")), list("show plots")), "\n", "    ", list(list(list("return_plot")), list("return plotting object")), "\n", "    ", list(list(list("save_plot")), list("directly save the plot [boolean]")), "\n", "    ", list(list(list("save_param")), list("list of saving parameters from ", list(list("all_plots_save_function")))), "\n", "    ", list(list(list("default_save_name")), list("default save name for saving, don't change, change save_name in save_param")), "\n",
"  ")

Seealso#

`plotCombineInteractionChangedFeats <#plotcombineinteractionchangedfeats>`__