heatmSpatialCorGenes#

Last Updated: May 20, 2025

Description#

Create heatmap of spatially correlated genes

heatmSpatialCorGenes(...)

...

Arguments passed on to heatmSpatialCorFeats

gobject: giotto object
spatCorObject: spatial correlation object
use_clus_name: name of clusters to visualize (from clusterSpatialCorFeats())
show_cluster_annot: show cluster annotation on top of heatmap
show_row_dend: show row dendrogram
show_column_dend: show column dendrogram
show_row_names: show row names
show_column_names: show column names
show_plot: show plot
return_plot: return ggplot object
save_plot: directly save the plot [boolean]
save_param: list of saving parameters, see showSaveParameters
default_save_name: default save name for saving, don’t change, change save_name in save_param