heatmSpatialCorGenes#

Last Updated: Jan 29, 2024

Description#

Create heatmap of spatially correlated genes

Usage#

heatmSpatialCorGenes(...)

Arguments#

...

Arguments passed on to heatmSpatialCorFeats

gobject

giotto object

spatCorObject

spatial correlation object

use_clus_name

name of clusters to visualize (from clusterSpatialCorFeats())

show_cluster_annot

show cluster annotation on top of heatmap

show_row_dend

show row dendrogram

show_column_dend

show column dendrogram

show_row_names

show row names

show_column_names

show column names

show_plot

show plot

return_plot

return ggplot object

save_plot

directly save the plot [boolean]

save_param

list of saving parameters, see showSaveParameters

default_save_name

default save name for saving, don’t change, change save_name in save_param

See Also#

heatmSpatialCorFeats