filterInteractionChangedGenes#

Last Updated: Jan 29, 2024

Description#

Filter Interaction Changed Feature scores.

Usage#

filterInteractionChangedGenes(...)

Arguments#

...

Arguments passed on to filterInteractionChangedFeats

icfObject

ICF (interaction changed feature) score object

min_cells

minimum number of source cell type

min_cells_expr

minimum expression level for source cell type

min_int_cells

minimum number of interacting neighbor cell type

min_int_cells_expr

minimum expression level for interacting neighbor cell type

min_fdr

minimum adjusted p-value

min_spat_diff

minimum absolute spatial expression difference

min_log2_fc

minimum log2 fold-change

min_zscore

minimum z-score change

zscores_column

calculate z-scores over cell types or genes

direction

differential expression directions to keep

See Also#

filterInteractionChangedFeats