filterCellProximityGenes#

Last Updated: Mar 11, 2023

Description#

Filter Interaction Changed Feature scores.

filterCellProximityGenes(...)

...

Arguments passed on to filterInteractionChangedFeats

icfObject: ICF (interaction changed feature) score object
min_cells: minimum number of source cell type
min_cells_expr: minimum expression level for source cell type
min_int_cells: minimum number of interacting neighbor cell type
min_int_cells_expr: minimum expression level for interacting neighbor cell type
min_fdr: minimum adjusted p-value
min_spat_diff: minimum absolute spatial expression difference
min_log2_fc: minimum log2 fold-change
min_zscore: minimum z-score change
zscores_column: calculate z-scores over cell types or genes
direction: differential expression directions to keep