Extract nearest network#

Description#

Extract nearest network

Usage#

extractNearestNetwork(...)

Arguments#

...

Arguments passed on to get_NearestNetwork

nn_network_to_use

“kNN” or “sNN”

network_name

name of NN network to be used

output

return a igraph or data.table object. Default ‘igraph’

gobject

giotto object

spat_unit

spatial unit (e.g. “cell”)

feat_type

feature type (e.g. “rna”, “dna”, “protein”)

set_defaults

set default spat_unit and feat_type. Change to FALSE only when expression and spat_info are not expected to exist.

See Also#

get_NearestNetwork