combineInteractionChangedGenes#

Last Updated: Mar 11, 2023

Description#

Combine ICF scores in a pairwise manner.

combineInteractionChangedGenes(...)

...

Arguments passed on to ``combineInteractionChangedFeats` `

icfObject: ICF (interaction changed feat) score object
selected_ints: subset of selected cell-cell interactions (optional)
selected_feats: subset of selected Features (optional)
specific_feats_1: specific Featureset combo (need to position match specific_feats_2)
specific_feats_2: specific Featureset combo (need to position match specific_feats_1)
min_cells: minimum number of target cell type
min_int_cells: minimum number of interacting cell type
min_fdr: minimum adjusted p-value
min_spat_diff: minimum absolute spatial expression difference
min_log2_fc: minimum absolute log2 fold-change
do_parallel: run calculations in parallel with mclapply
verbose: verbose